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I have a few videos that have bad timestamps. I can't really seek the video. I don't want to re-encode the video, just fix the timestamps. Is there an app to do this?

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Which video player?

What kind of videos? AVI? WMV?

This might fix WMV files where you cannot seek - http://www.microsoft.com/windows/windowsmedia/knowledgecenter/mediaadvice/0064.mspx#EKG

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