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I have a TurnKey Mantis linux appliance and I want to make the connection secure.I've bought from GlobeHost a certificate and got the following files :sub-domain_domain_net.ca-bundle and sub-domain_domain_net.crt.I've got the Sftp connection to work.How can I install the certificate ?

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Take a look at this blog post, should answer you question.

http://www.turnkeylinux.org/blog/ssl-certificates

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