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After downloading a kindle book, I can open Kindle for Mac app by clicking a button. How can I do some similar things? I mean, how can I open an app from Safari?

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I don't know if this is what you are looking for, but in safari, if you've downloaded a document or app, you can click that document or app in the Downloads window and it will open it.

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If by "app" you mean the programs that run on iOS you get from the App Store in iTunes, you can't.

If by "app" you mean applications you download from the internet via Safari, the following guide will be of help:

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