If you're up for a little experiment, I noticed that the Apple Boot Camp drivers for Windows allow reading/writing of HFS+ file systems (thus allowing access to your Mac's data when booted into Windows). I only tested this on a real Boot Camp partition, but you could try installing the drivers on your regular Windows machine (after appropriate backups of course). This would, if successful, allow you to use a file system with a more reasonable file size limit than FAT32, which is just a few gigs.
However, you're probably better off leaving the work computer in pristine condition and messing around with drivers and extensions on your Mac at home.