I'm setting up a local database for gene annotation following the instructions on this page. They provide an .sql file to create some MySQL table structures (step 4) and several data files to populate the tables (steps 5-7). I've completed the setup process through step 5, but I am getting errors at step 6. What's unnerving is that the error I'm getting is different based on which directory I execute the
mysqlimport command from.
standage@farnsworth:~$ mysqlimport -u wendel2go -p --fields-terminated-by='\t' b2g Desktop/gene2accession Enter password: mysqlimport: Error: 13, Can't get stat of '/var/lib/mysql/Desktop/gene2accession' (Errcode: 2), when using table: gene2accession standage@farnsworth:~$ cd Desktop/ standage@farnsworth:~/Desktop$ mysqlimport -u wendel2go -p --fields-terminated-by='\t' b2g gene2accession Enter password: mysqlimport: Error: 29, File '/var/lib/mysql/b2g/gene2accession' not found (Errcode: 2), when using table: gene2accession
I'm not getting very informative results when I'm googling this error. Any ideas?