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I can't find an efficient tool for cutting out clips from .mkv video. Can you recommend me a software, who can cut .mkv video without recompression.

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Boilsoft's MKV splitter is what you need

Boilsoft Video Splitter is very powerful MKV Splitter and MKV Cutter, split MKV, cut MKV without re-encode, So It is very fast and without any quality loss.

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I have tried this application, it does not support mkv so well, although it claims it does. – Starx Jan 24 '11 at 13:37
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I believe FFMpeg (http://ffmpeg.org/) supports MKV, and should let you capture a given portion of the input file without transcoding. Remember that MKV is just a container, so you may need to set the output video and audio formats to match the inputs: "-vcodec copy -acodec copy" should do this.

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