I just had my MacBook returned from service and copied my old user folder into /Users and everything worked fine as expected. But even though the machine is really new, only 20% space is being used, and I am running with tons of ram and a fast SSD the user experience is really lacking: at times Mail.app will hang between tabbing between the To and Subject lines, using Safari/Firefox will also have noticable lag when tabbing and just generally the machine seems to hang a bit every now and then (irrespective of program).

When creating a fresh new user the experience is something else completely - everything is superfast, no lagging when entering data in fields, and no "spinning color balls" (whatever they might be called).

I always have the Activity Monitor running in the dock, so I can see I am barely using any CPU - any idea on what can cause the lagging behaviour in the various programs?

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Did you move the bundled applications? Many of them have serious issues with that. For example moving Activity Monitor to /Applications/ causes it to hang when it's opened. (~/Applications/Utilities/ is fine though.) Is Spotlight indexing, or has it finished indexing yet? – Lri Apr 27 '11 at 13:55
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Have you checked Activity Monitor when that happens? Have you tried running fs_usage -f filesys in Terminal to see what paths get accessed when it's "lagging"? What (background/menubar) applications do you run? Do you keep applications in ~/Applications? – Daniel Beck Apr 27 '11 at 18:03
I keep stuff like Glassfish in ~/Applications and some rarely used utils. Activity Monitor is always running minimized so I can monitor cpu usage from the dock, and it never spikes when these lags occurs. I don't run anything besides Skype and Dropbox. I'll try the fs_usage tip, but I am running on a fast SSD and disk usage is never a problem like on a hard drive. – oligofren Apr 29 '11 at 10:46
Try using a tool that shows main memory activity. – Daniel Beck Apr 30 '11 at 12:04
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