I'm using Molden, a molecular modeling program in the Xming X-Windows server, and when I set it up to put it's myriad subwindows into a single frame, I seem to lose the ability to move them around and bring them forward (on top of other windows).
In the below picture the "Directory..." window should be above the window with more buttons, as I'm trying to open a file.

How do I do this in Xming, or assuming this is like X-Windows anywhere, in X-Windows.