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Is there an online file storage service (like DropBox, Google Drive, Skydrive) where it is possible to exclude files from sync based on filename and/or filename extension?

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sugersync does apparently, as does spideroak, and there is a thirdparty tool called dropboxfilter for dropbox – Paul May 16 '12 at 6:30
@Paul: Perhaps your comment should be an answer. – Lèse majesté May 17 '12 at 23:26

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SpiderOak. https://spideroak.com/manual/sync By the way, the data on SpiderOak is automatically and transparently encrypted.

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