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i use currently filezilla for ftp client . but when upload a folder that same exists on remote server. all files sent. What software could I schedule it to sync my local folder to a folder on my FTP account?

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WinSCP. See this answer to a slightly different question. – RedGrittyBrick May 17 '12 at 10:56
You need to specify operating system for anyone to be able to answer without guessing. – Daniel Andersson May 17 '12 at 12:13

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