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I have a ton of MKV files I need to convert to MP4 and my chosen software is Handbrake.

I'm stuck on which settings would be best for the conversion. I want to retain full quality. Do I just convert with the original settings and not change anything or is there any specific thing I need to change?

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Here is quite detailed guide on Handbrake's settings… – janot May 18 '15 at 23:38
up vote 66 down vote accepted

First of all, ask yourself: Do you need to re-encode? If you only want to change the container from MKV to MP4, you don't need to encode anything, you just change the "wrapping" around the video. This doesn't lose quality.

You can swap containers easily with FFmpeg – you just have to tell it to copy the video and audio bitstreams:

ffmpeg -i input.mkv -c:v copy -c:a copy output.mp4

Note that this only works if the audio and video codecs are supported in the MP4 container, which is the case for H.264/H.265 and AAC, for example, but not for many others.

There are also tools like MP4Box which can create MP4 media — the same exists for MKV with MKVtoolnix.

Finally, learn the difference between video codecs and containers. This will help you understand why changing containers works and why MP4 and MKV have little to do with video, actually. If you want to know more about FFmpeg – I wrote a blog entry on the Super User blog about it.

However, you can not retain full quality when encoding a video that was already encoded. This is because the original has already been compressed by throwing away information, and by doing it again you're introducing generation loss. Often, you want to re-encode video when for example its size changes, or you need a specific bit rate to squeeze your video stream into, or your original video uses a codec that you can't play for whatever reason.

So, if you load your MKV video into Handbrake, and re-encode it with x264, the h.264 encoder Handbrake uses, store it in an MP4 container, you are going to lose quality no matter what, unless you set the bitrate or quality factor so high that you won't (really) see the difference. But then, the file size will be bigger as well. In the ideal case, you would convert the video to an uncompressed video, which won't lose you any quality, but give you files of a dozen Gigabytes in size, even for a few minutes of video material.

If you really have to re-encode, make sure not to set an average bitrate, but choose a Constant Rate Factor, which is something like "constant quality". Just like "variable bit rate" for MP3: It will make sure to spend the bits on the video parts that need them and make the overall quality better — at the same file size.

Sane CRF values are from 19 to 24, where lower means "better". So, you could try with a Rate Factor of 19. Also, make sure to set the "High" profile, which enables the encoder to use all bells and whistles and optimize the quality for a given bit rate.

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Thank you! It seems you are the only one who seems to care about this question and help me out, I followed your advice and seems the quality is same as the original! :) – orange Sep 11 '12 at 18:46
For some mkv files this will fail with (Could not write header for output file...incorrect codec). Use ffprobe -i file.mkv to see what format the a/v is in, you will likely need to reecode with x264 video and aac/ac3 audio – ski_squaw Apr 9 at 18:33

This works very well for me. Below is code to convert all .mkv to .mp4 files in windows.

  • You may need to add ffmpeg to your path. you can just put the full path to the ffmpeg executable, D:\apps\ffmpeg\bin\ffmpeg.exe
  • Download ffmpeg for windows here.
  • Usage: Drop a .mkv file onto it. It will do the whole directory.

Save in a file called convert.bat.

for %%a in ("*.mkv") do ffmpeg.exe -i "%%a" -vcodec copy -acodec copy "%%~na .mp4"
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Works like a charm. – oldmankit Mar 21 at 6:36

protected by slhck Feb 11 '14 at 7:23

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