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I have two 500GB hard drives in my laptop. I have formatted both so they contain nothing. When I'm installing Windows 7, depending on the drive I choose to install Windows on I may or may not get the 100MB added.

When I install on drive 0 it doesn't get added.

When I install on drive 1 it always gets added.

Why would the partition be added on one drive or not the other?

I think it's the primary HDD that doesn't get the 100MB and the secondary one does.

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Its the other way around. As for the reason its because boot pritority. –  Ramhound Feb 19 '13 at 12:23
    
So no matter which drive I install on, the 100MB should appear on the primary drive? –  PriestVallon Feb 19 '13 at 12:35
    
I didn't say that. Change the boot order of the disks, verify my theory, then report back. –  Ramhound Feb 19 '13 at 12:58
    
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@PriestVallon: I just wanted to leave the link for reference :) –  Oliver Salzburg Feb 19 '13 at 13:26
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This “stub” of a partition, which is new in Windows 7, serves two functions. First, it holds the Boot Manager code and the Boot Configuration Database.
Second, it reserves space for the startup files required by the BitLocker Drive Encryption feature. If you ever decide to encrypt your system drive using BitLocker, you won’t have to repartition your system drive to make it possible.

Understand (and Get Rid of) the Mysterious Small Partition

I really don't understand why it wouldn't be created if you install to the first drive, unless you have a pre-existing partition on it. Usually, the partition is always created on an empty drive for the reasons quoted above.

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I've had it not create the partition when installing from a USB stick. I guess the USB stick was somehow picked up as the first drive. Caused all sorts of problems because it wouldn't create the partition but then later wouldn't boot (or some other problem, can't remember specifics) because the 100 MB partition wasn't there. –  Kibbee Feb 19 '13 at 13:48
    
@Kibbee people install from usb stick often. I did onto a fresh drive and it made 2 partitions one 100MB one the system one. I haven't seen it do differently. Funny that your 100MB partition wasn't created. –  barlop May 18 at 16:45
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