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I would like to hide .DS_Store files generated by Mac OS, cause I'm switching between Mac/Win very often and I don't like seeing these files in my Dropbox folder when i'm in Windows.

Is it possible to hide them in Total Commander?

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Exactly for this purpose, Total Commander maintains a list of ignored files, which can be used to hide many annoyances like this (or Thumbs.db, "System volume information", etc.).

Look at this question on SO.

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