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I recently upgraded by Windows XP desktop to Windows 7 using the Home Premium Upgrade installation DVD. My original plan was to reformat the boot disk during installation, however, during the installation process that wasn't an option (I'm assuming this is because the old installation of Windows is needed during the installation process). The upgrade went fine.

After a few days of burn-in time I started deleted old unneeded files off the hard drive (something I was hoping to avoid by doing the reformat mentioned above). After this clean-up process, the system started running CHKDSK at each reboot of the system. After several iterations of running CHKDSK and rebooting, Windows started fine. However, some programs such as Firefox and MS Security Essentials stopped working. Security Essentials puts up a dialog box at startup suggesting that a reinstallation is needed; Firefox just crashes.

Assuming there is still something wrong with the hard drive, I tried using Spin Rite to examine and repair the hard drive. However, on the first sector it examines it goes right into the DynaStat Data Recovery mode and never makes any further progress.

At this point, Windows boots fine. So the question is - should I bother reinstalling the corrupted programs, or should I write off this hard drive before I invest any more time reinstalling programs and restoring the data I saved before the upgrade? If I decide to go with a new hard drive, do I have to do a (minimal) XP installation before I can use the Windows 7 upgrade media and license key?

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That definitely sounds to me like genuine filesystem corruption, though it may not be caused by any physical defect on the drive. Unplanned shutdowns are the most common cause of this, and the effects do not always show up immediately as the problem could be somewhere were the system doesn't touch in day-to-day operation. While the NTFS filesystem is relatively safe against this sort of thing (it journals filesystem metadata, like ext3 does by default under Linux, so some corruption due to unplanned events can be repaired) it does still sometimes happen.

So I would test the drive more thoroughly before chucking it. I suggest installing some software that can read and monitor the drive's SMART parameters (if the drive does have a physical problem, these will probably show some indication of it) and can initiate the drive's own self test routines.

Even if you keep the drive, I would suggest a reformat and reinstall at this point. Repairing a significantly corrupt filesystem is a losing game (you can never be sure everything is 100% fine).

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