I've got a lot of videos with the opening and endings cut out from each episode. They use ordered chapters and quite a few players do not play nice with these. I would like to merge them into a file. There is an option called UnlinkMKV for Linux but I can't see something for Windows. What is the best way to do this?
I ended up developing an interface to do this for myself and porting the script over nearly a year later. You can find details on my blog here: http://vaughanhilts.me/blog/2015/04/30/unlinking-mkvs-on-windows-osx-linux.html
The steps essentially involve:
Github project: https://github.com/hilts-vaughan/UnlinkMKV-GUI
I hope this helps someone.