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I've got a lot of videos with the opening and endings cut out from each episode. They use ordered chapters and quite a few players do not play nice with these. I would like to merge them into a file. There is an option called UnlinkMKV for Linux but I can't see something for Windows. What is the best way to do this?

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define quickly. –  Sickest Apr 12 '14 at 23:44
@Sickest I've removed "quickly". The original thought process was "without much user interaction", i.e: automated. Although, answers automated or with user interaction are good, too. –  Vaughan Hilts Apr 12 '14 at 23:47

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