I use handbrake to compress/encode video files and I'm quite happy with the results. It gives me smaller file size with no quality loss. The problem is that when I batch convert multiple files from multiple folders they go to one destination folder (the folder which I specify in tools >> options.
Sometimes 2 files from different folders have the same names and then the the name collision occur and handbrake tells me that the file is already added to the queue.
It would be great if the converted files go to the original folders replacing the original files.
Is there any way to have this functionality in handbrake? (Note: I have handbrake both on my Windows machine and Ubuntu machine).