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I recently bought a SSD and I installed Windows on it. Before the install I disconnected the Hard Drive (with Windows install) and repluged it once I was able to boot on the SSD.

Then, I created a new partition on the Hard Drive and moved all my important files on it. Finally I deleted the Windows partition, but I see 2 "remaining" partition : EFI System Partition and Reserved Partition.

Is it safe to delete these two partitions?

Disk 1 is SSD and Disk 2 is Hard Drive

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    It is safe to delete those partitions on the HDD neither partition is being used on the HDD. – Ramhound Apr 8 '16 at 17:09
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"Before the install I disconnected the Hard Drive (with Windows install) and repluged it once I was able to boot on the SSD."

If you did this, then it is safe to delete those 2 partitions.

"EFI System Partition and Reserved Partition."

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