What this appears to show is my SSD working 95-100% all the time, and my HDD fluctuating between 50 and 100, which may mean that it is waiting on the SSD for the files to be read. Additionally, starting any programs on my SSD became very slow when the files were being moved. Is it possible that my SSD is actually slower then my HDD?
EDIT: I don't find the question that has been marked as duplicated from to be at all relevant. He is asking for a benchmarking tool, which I'm pretty sure goes under the "Opinion based" category anyway, and is completely different from my question which asks for reasons behind a bottleneck.As can be seen below it has attracted a completely different answer, to which I found to be useful.