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I recently upgraded to Debian Testing, currently Stretch. In Jessie, the cli tool to manage the fan control was

# aticonfig --pplib-cmd "set fanspeed 0 50"`

However, in Stretch, this tool was removed. Where did it go, can I get it back, or is there an equivalent to replace it?

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The problem is that AMD stop supporting unix based system that's why it was removed from repositories.

More on this: The AMD Catalyst Legacy driver - supporting the Radeon HD 2000/3000/4000 series - is not available for Debian 8 "Jessie", as upstream has not updated the driver for newer Xorg releases

and in the bug report :

Upstream hasn't produced an update for a couple years now even though the package is entirely broken: http://bugs.debian.org/726500

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