While setting up my Eclipse IDE it seems that I don't know how to change the background color of this Java-assisted search:
How can I do that?
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That's a tricky one!
These are the marked occurrences. You change them in the preferences, under General → Editors → Text Editors → Annotations, and select Occurrences from the list.
This thread might help you https://stackoverflow.com/questions/96981/color-themes-for-eclipse