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determining the named pipe that PuTTY's pageant is using

Start Pageant with the option --openssh-config pageant.conf. It will write an OpenSSH-compatible configuration file to the specified path, which you can later Include from your main OpenSSH config ...
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Unable to browse private key in PuTTY

In PuTTY 0.78, the Private key file for authentication box was moved further deep in panel hierarchy to Connection > SSH > Auth > Credentials:

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